YFeriel

Hello, I finally found the solution. I had to use the colabfold script the parse.parse_a3m of alphafold on my outputs so that they are similar to the API outputs.

Hello, I finally found the solution. I had to use the colabfold script the parse.parse_a3m of alphafold on my outputs so that they are similar to the API outputs.

Hi @yoavatsmonraz81 , Did you find a solution? I'm facing a similar issue and would appreciate any insights. Thanks!

Hi @cshih14 @ketatam , Did you find a solution? I'm facing a similar issue and would appreciate any insights. Thanks!

Dear @martin-steinegger Thank you for your suggestion. I understand the rationale behind using MMseqs2 for pre-clustering, but I am facing a particular challenge with my dataset. The proteins I am...

Thanks a lot for the clarification! @martin-steinegger Just a quick follow-up: Let’s say we cluster directly the full 214M AlphaFoldDB structures with Foldseek, and remove redundancy only afterward manually, for...

Hello @martin-steinegger @milot-mirdita , I hope this message finds you well. I wanted to follow up on an issue I posted earlier regarding the clustering results and annotations. I understand...