Xiaodiao1111

> Do you have outputs in the segments.bed file? Hello, I have "segments.bed file" in the output, and some have content and some do not, but the same error is...

These two files are output log files. bed file in my "segments" folder has content, so does "graphs" folder, but files in "predict_results" folder are empty. First： /usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/dtypes.py:516: FutureWarning: Passing...

Second： 2023-11-06 15:45:43,133 [INFO ] ******************** Start SVision, version 1.3.8 ******************** 2023-11-06 15:45:43,133 [INFO ] CMD: /usr/local/bin/SVision -o /container/path/output -b /container/path/data/merge_01.pbmm2.sorted.bam -m /T02Data/haoxp/trio/data/svision-cnn-model.ckpt -g /container/path/data/Homo_sapiens_assembly38.fasta -n TGS0731-1 -s 5 --graph...

> Sorry for the delayed reply. I think the reason for 'empty score file ' is due to the loss of the deep learning model files of SVision. There are...

> Sorry for the delayed reply. I think the reason for 'empty score file ' is due to the loss of the deep learning model files of SVision. There are...

> 你好！ 首先感谢您的回复，我绑定了您的新版本，但仍然无法处理Pacbio序列数据。信息如下： 我用一条染色体的Pacbio序列数据测试了advntr，错误信息如下： if genotype_result.copy_numbers is None: AttributeError: 'NoneType' object has no attribute 'copy_numbers' > > 然后我只使用vntr ID来测试advntr，错误信息如下： self.print_genotype_in_bed_format(vntr_id, genotype_result.copy_numbers) AttributeError: 'tuple' object has no attribute 'copy_numbers' > >...

> 你好， > > 感谢您报告该问题。 VCF 输出仅适用于短测序数据集，因为它尚未在 PacBio 数据集上进行全面测试。 我已经解决了这个问题，现在可以通过 Github 更新代码来使用它们。 我很快就会发布包含更新的新版本，但如果您需要在此之前使用它，请使用此[说明更新 adVNTR](https://advntr.readthedocs.io/en/latest/installation.html#install-from-source-not-recommended) Hello, have you solved this problem? I have the same problem.

> Hi Sara, > > Thanks for following up. > > 1. This is the advntr command that I run: > > ``` > advntr genotype --alignment_file $my_pacbio_bam_file --working_directory log_dir...