Xenophong comments

Results 5 comments of


                                            Xenophong

Circular manhattan with two traits, adjust -log10(p) axis to align between traits

yes, thanks, and sorry for the obvious answer! :)

Question about Constant Values in r.df2 Column of Coloc Output

Hi, thank you for your quick response! Indeed, I may have misinterpreted the output. Is it possible to provide the link to the official documentation of the `coloc.abf()` output? My...

Question about Constant Values in r.df2 Column of Coloc Output

sure! Here is the summary for the full input parameters: - GWAS: ``` > unique(input$N_gwas) [1] 467 > summary(input$beta_gwas) Min. 1st Qu. Median Mean 3rd Qu. Max. -0.330330 -0.038549 -0.010866...

Question about Constant Values in r.df2 Column of Coloc Output

good catch! This is my full GWAS summary statistics: ``` > r_gwas[1:3,] Key: Predictor Chromosome Basepair A1 A2 Wald_Stat Wald_P Effect 1: chr7_44077165_T_C_b38 7 44077165 C T 1.1513 0.24959 0.089449...

Question about Constant Values in r.df2 Column of Coloc Output

I've resolved the issue. The software I used to calculate the summary statistics mislabeled the SE column as SD. Thank you for the debugging session—it really helped me sort things...