Wytamma Wirth

Results 34 issues of Wytamma Wirth

It's possible to set up [change streams](https://docs.mongodb.com/manual/changeStreams/) for each endpoint so that applications can subscribe to changes in a collection using [sockets](https://abaganon.com/tutorials/web-sockets.html). This would be useful for realtime applications. May...

enhancement

Use [fastapi-mail](https://github.com/marlin-dev/fastapi-mail) to send mail i.e. for authentication.

Add global and endpoint level authentication using https://github.com/frankie567/fastapi-users

enhancement

Write documentation using the [MkDocs](https://github.com/squidfunk/mkdocs-material) materials theme.

documentation

Change DataRelation to a type so that it is the same as Unique in model creation.

Currently the full metadata can only be downloaded with the sequence data. Is there a way to only get the metadata without downloading sequences? (#16)

enhancement

When I download a metadata file there is no AA Substitutions column... I'm not sure why we have different columns. It seems maybe different users are getting different results from...

bug
GISAID

Need a test for the `export_fasta` function.

help wanted
good first issue

When updating GISAIDR sometimes multiple versions (the old and new) are installed at the same time. Currently can fix by running detach("package:GISAIDR", unload=TRUE) before updating. However, is there an automatic...

bug

Columns are currently returned as strings but they should be cast into appropriate types before being returned to the user e.g. `date = as.Date(date)`.

enhancement