Peter Woollard

Yesterday, I talked with Colman (ENA product owner and also my line manager). He is fine for me to investigate and explore what needs to be done. So that is...

so @pbuttigieg I am thinking what is the next useful step? I have sequence experiment examples that pass this exploratory JSON-LD schema/ The final solution may be similar or rather...

Finally started... https://docs.google.com/document/d/19IoPj-Y0_J2ZRr6zr5jhJb438d_CjsNv9sjG53TEdhI/edit?usp=sharing JSON generated for study(=project) and read_run objects. Next steps: make pilot JSON-LD for study make pilot JSON-LD for read_run Generate sample level metadata as JSON and then...

Brilliant, thanks for moving this on Montana. Good, yes worth discussing at the CIG today. Good point Lynn, yes the original group may have had a different train of thought...

This is the latest list of missing values is below: [INSDC page](https://www.insdc.org/submitting-standards/missing-value-reporting/) was not clear, e.g. “missing:control sample” or “not applicable:control sample” AI: TWG: add the terms to the YAML...

Agree Chris, that "missing: data agreement established pre-2023" is very INSDC specific.

The INSDC web page URL is the correct one. https://www.insdc.org/submitting-standards/missing-value-reporting/ These are the exact expected values, if missing values are used in INSDC where mandatory values can not be provided:...

Yes, it is a bit inconsistent with "missing:" being prefixed sometimes. There is this sentence of guidance on the web page When reporting a missing mandatory field, the eight granular...

Here are is the rst file (I had to give it a .txt extension) and I rendered it into PDF via HTML(from the rst) so that one can see it...

# Comparison of the country terms from INSDC and GAZ INSDC - removed oceans and seas) GAZ - [ used the country subset OWL ](https://raw.githubusercontent.com/EnvironmentOntology/gaz/refs/heads/master/src/ontology/gaz_countries.owl) used the straight labels and...