Will Tyler

Add method to test for strict equality between PDB entities

11

### Acknowledgements - [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have...

Add a PDBML (PDB XML) parser

6

### Acknowledgements - [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have...

## Acknowledgements - [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have...

Add Cochran-Mantel-Haenszel statistical test for association

5

### Description In this pull request, I add a function to perform a Cochran-Mantel-Haenszel statistical test for association. This pull request closes #13481. ### Testing I add unit tests. Since...

Add PC-AiR

7

### Description In this pull request, I implement the PC-AiR method as described in this [paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836868/). This includes the PC-AiR algorithm for partitioning samples into an unrelated set and a...

Add convenience method to dummy code categorical variables

1

### Description In this pull request, I add a convenience method to dummy-code categorical variables in a matrix table. See the [dummy variable Wikipedia article](https://en.m.wikipedia.org/wiki/Dummy_variable_(statistics)) for background. This pull request...

Update MatrixTable.show

3

### Description In this pull request, I change the implementation of the `MatrixTable.show` method. Previously, `show` would create a table and then show the table by reusing the table implementation...

Improve CE Align

12

### Acknowledgements - [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have...

Add BinaryCIF parser

4

### Acknowledgements - [X] I hereby agree to dual licence this and any previous contributions under both the _Biopython License Agreement_ **AND** the _BSD 3-Clause License_. - [X] I have...

BinaryCIF Parser

2

### Background I plan to implement a BinaryCIF parser, and I am opening this issue as a forum for those who are interested to discuss the implementation of the parser....