Wesley Delage

icon location Phd in Bioinformatics. Interested in sequence algorithm, structural variation, sc-RNA seq and Spatial Transcriptomics.

Results 2 comments of Wesley Delage

Crop with SpatialPlot with Seurat 4.1 dev branch

Hi @k3yavi, I have updated ggplot2 and Seurat but the issue remains. ``` sessionInfo() R version 4.1.2 (2021-11-01) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 21.10 Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0...

Which is a more sensible SCTransform-integration approach to account for donor variability and between-dataset sequencing depth?

Hi, If i understood, you have 6 samples so perform approach 1 : * merge all samples together (to get the same matrix length) then split them by donor_id `...