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                                            Wenzhao Dai

import apply_symmetry_to_xyz_atomwise in inference_sampler

This pull request introduces new imports to the `inference_sampler.py` file, preparing the module to support symmetry operations during inference. These changes set up the codebase for future enhancements related to...

Add OXT atom to each protein chain

In RFD3 outputs, the C-terminus of a protein chain missing the OXT atom. Logic has been added to restore missing OXT atoms where applicable. A new utility script, add_oxt.py, has...