Wenhhao

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Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

Thanks @guoci . So is that means I could start from Philosopher Report? And could we get rid of this issue with the lateset release? Hundreds of GB is not...

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

@guoci Do you think the `Cannot write file` error is due to big binary file size? Since I am not sure about it, just my guess.

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

I can try it, but it will take more than a month. So it would be better if there were a definite solution.

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

> @Wenhhao did you see any `.tsv` files generated? `.tsv` was not generated.

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

> May I ask in which command Philosopher needs 2TB memory? Thanks, Fengchao > On Sun, May 8, 2022 at 1:15 AM XiaoQi ***@***.***> wrote: @Wenhhao try the latest release...

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

> @Wenhhao Could you give me an estimate on how much data you're trying to process? Please sum the size in GBs of all your .pepXML files We have more...

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

> Hi @Wenhhao , > > We are revisiting the memory issue in Philosopher. May I ask if you have tried the latest Philosopher, and if the memory requirement reduced?...

Philosopher cannot create report files due to unknown reason. It also needs more than 2 TB memory with 280 GB interact.pep.xml files.

Hi @fcyu , Here is some detail about a Philosopher Filter error caused by incomplete ProteinProphet result as I mentioned before. With larger dataset, Philosopher Filter was interrupted and threw...