WayGW

Results 6 comments of WayGW

how to use netVisual_heatmap() to compare heatmaps on the same scale

I think there is some miscommunication happening. When people are saying they want the same scale bars across the groups is when they are using the objectlist of individual cellchat...

Bug in the liftCellChat function

I just happened to look and saw you had the same issue half a year ago. I assume they're just nor looking into it or doing fixes anymore? https://github.com/jinworks/CellChat/issues/193

Liftcells is erroneously altering ligand source cell ID

This looks to be the same issue mentioned back in march: https://github.com/jinworks/CellChat/issues/108

Cellchat 2.1.2 issue - no slot of name "data.smooth" for this object of class "CellChat"

Yeah, I am having the same issue: > View(cellchat) Error in eval(call("@", object, slot)) : no slot of name "data.smooth" for this object of class "CellChat" > cellchat

SCTransform some variable features absent from scale.data

I am having similar issues. Using all genes as residual features and/or setting return.only.var.genes = FALSE I still only have a small percentage of genes in the SCT scale.data slot....

SCTransform some variable features absent from scale.data

I am not sure this is entirely correct, so if someone knows more about it like from the seurat team please correct me. I still ran SCTransform and then ran...