Lukas W

This would be a great feature. Very hacky, but as a workaround this could simply be done by parsing input text into the macro language. Something along these lines. Works...

For others stumbling across this issue, here's a little snakemake template that mimmicks multi-threading by running badread multiple times and concatenating the fastq files at the end. ``` threads =...

You can use a little trick with `/dev/stdout`: `minimap2 -x map-ont -d /dev/stdout seqs.fa | gzip >seqs.mmi.gz`

Hi Mayra, I'm afraid I can't reproduce the issue. The packages are installing fine for me on a new conda environment. Would you mind running `ls -l /home/apps/conda/miniconda3/envs/devia-te-0.3.8/lib/R/library` and posting...

Thanks! Is this a shared system, or is `appadmin` your user? Any other user trying to write in this directory would probably get an error about the directory being not...

I see. This tool was created when R integration in conda was a bit patchy and not all packages were available, so installation of R packages was done during the...

Thanks very much for reporting back, and glad that it worked out this way. The error about shared libraries of samtools is an issue on their end with some dependencies...

Hi thanks for getting in touch! Could you check if the names of the single copy genes you are using appear in the same way: - in the alignment file....

Unfortunately, the Bokeh svg export does not respect themes [as reported in this bug](https://github.com/bokeh/bokeh/issues/10804). Apparently, this has since been fixed for Bokeh >3. So as far as I can see...

Running into the same issue. Reinstalled Jetbrains tools and plugins and now the button to toggle the thumbnail/structure sidebar is gone. In the preferences it's only possible to toggle the...