scImpute

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```droprate[mucheck & droprate > drop_thre] = 0``` in function imputation_model8, imputation_model.R. I just wonder what is the deeper meaning behind this sentence. Why do you have to check the value...

NuosiWu

Hi, I got the following error when running the imputation on a dataset. Could you please advise what's the reason for this error? Thanks. [1] "reading in raw count matrix...

xuyungang

doParallel performance on windows edition R

2

When I try to use scImpute, the `ncores` is useless. It will use all the CPU resources automatically. As far as I know, Windows system has different parallel mechanism with...

ygidtu

Dear developers, Thanks for the great work and sharing. I noticed a typo in the ?scImpute that says: _genelen | An integer vector giving the length of each gene. Order...

nbroguiere

Part of the data not imputed

3

I randomly subsampled my counts data for imputing. The labels are known and there are four classes. When I tried 1000 or 1500 cells, it worked well. But when I...

xianingz

outfile is space delimited rather than tab delimited

1

Hello Vivian, I found the output file by scImpute is space delimited rather than tab delimited when I specify `outfile='txt'` My full scimpute call: ```R scimpute(count_path, infile = "txt", outfile...

wangz10

Parallel Processing cannot find library

1

Greetings, I am running this package on a computing cluster in parallel, and it keeps throwing an error like this one: "worker initialization failed: there is no package called 'penalized."...

gouinK

No parallel version

1

Is it possible to provide a version that completely turns off the parallel, or use mclapply instead? The parallelization always throw the following error: Error in serialize(data, node$con) : ignoring...

zji90

Hi, Since support seems to have been dropped, it seems like a long shot, but any suggestion regarding this error would be much appreciated. Thanks anyone! > [1] "reading in...

josruirod