Vishal Jain

> DICOM and most (if not all) medical imaging software uses right-handed coordinate system. How did you end up with a left-handed one (LAS)? You may need to resample your...

I called nib.as_closest_canonical(img) on each pancreas volume and corresponding mask to re orientate my dataset into RAS prior to training however I am noticing the same issue.

sorry can you point to me which file / function this step is done? Still getting used to the framework. Though im beginning to suspect its more to do with...

update: Confirmed that error is due to guidance signal being flipped Here is the input click on slicer:  Saved foreground guidance signal being passed as input to model along...

> Why would the original image be getting flipped if its already been re orientated to RAS by the nibabel.as_closest_canonical() function?

> > @diazandr3s can you fix the pre-transform to take care of click points if you are doing a flip (orientation) on the original image.. > > Sure! More than...

Another update: There definetly seems to be difference in how the coordinates of the clicks are being recorded on slicer: Here is a spleen CT, you can see a click...

2nd update: For what its worth, i edited the header info of the pancreas mri volume so the qform and sform codes match that of the CT spleen volume's. When...

> 2nd update: For what its worth, i edited the header info of the pancreas mri volume so the qform and sform codes match that of the CT spleen volume's....

@diazandr3s sounds good, happy to help in any capacity.