Vicfero

Redundant asignation on Sequences Matrix = operator

1

https://github.com/scapella/trimal/blob/b240b070f0c9651761361bb3d55bd0e3c328558a/source/sequencesMatrix.cpp#L92 should be `matrix[i][j] = matrix[j][i];`

trimAl ends with a Segmentation fault when using -compareset and any of the alignments specified can't be loaded.

readAl / trimAl creates an empty file when trying to output a non-aligned format/alignment to an aligned-format.

1

Both programs output an empty file when given a non-aligned file / alignment (ex: dataset/example.007.AA.only_seqs) and asked to save in a alignment-format (clustal, phylip, etc) The program warns about this...