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Published 20 hours ago • verified publisher icon VascoElbrecht
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JAMP - Just Another Metabarcoding Pipeline

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U_cluster_otus() crashes if only one file is present

VascoElbrecht avatar VascoElbrecht

bug

Subsampling only works, if the file contains enough reads

> usearch -fastx_subsample "../D_Minmax/_data/GMP-04606)CCDB-S5-0053)CBGMB-00003_cut_minmax.fasta" -fastaout "_data/GMP-04606)CCDB-S5-0053)CBGMB-00003_cut_minmax_N50000.fasta" -sample_size 50000 -sizein -sizeout Solution, count reads first and then copy the file over if it has fewer reads than should be subsetted

VascoElbrecht avatar VascoElbrecht

bug

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verified publisher icon VascoElbrecht

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JAMP - Just Another Metabarcoding Pipeline

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