Valentin-Bio

Hello developer! I have previously ran DRAM on my HPC with no problems. Now I want to run it over a different set of genomes and I got the following...

question: What makes a ribbon to cross over other ribbons in sankey plot ?

4

Hello developer! , I'm using geom_sankey() to plot microbial taxonomies by given taxonomic ranks. This is what I did: `colnames(taxonomy_table)` > "Domain" "Phylum" "Class" "Order" "Family" "Genus" tableforsankey % make_long(Domain,...

Hello developer! I'm working with microbial abundance data. I used ggsankey to plot the number of bacteria classified under different taxonomic ranks. I was following this tutorial: https://r-charts.com/flow/sankey-diagram-ggplot2/ . So...

are reverse reads considered on this alignment?

1

Hello I used coverM to calculate relative abundance of MAGs across metagneomic libraries with the following parameters: coverm genome -1 *_1.fastq.gz -2 *_2.fastq.gz -d MAGs -x fa --dereplicate --dereplication-ani 99...

failed to load tblout table

1

Hello, I have previously used rhmmer to load hmmscan results using read_tblot() function. In my current case I want to load a hmmsearch table with nearly 26 thousand hits but...

Question about normalization

19

Hello developer, thanks for this awesome tool, after running stage_two I got several output tables. Apparently args_oap produces ARGs count tables with different normalization methods am I right ? (rpkm,...