Vahid
Vahid
_(1) Initially started at https://github.com/galaxyproject/galaxy/pull/4314; (2) all the commits of this PR were squashed into a single commit on Dec 11, 2019, the history of the changes are preserved via...
Enables configuring a Fence-based AuthNZ through python social auth (PSA). It depends on https://github.com/python-social-auth/social-core/pull/505
Fence repo: https://github.com/uc-cdis/fence TODOs: - [ ] Fence does not support `nonce` (see https://github.com/uc-cdis/fence/issues/600 )---a required claim by psa (and oidc specifications)---that results in `AuthTokenError` exception: https://github.com/python-social-auth/social-core/blob/000f8e5c8b505f2215e25deebf670b708a0578f4/social_core/backends/open_id_connect.py#L134-L143 Hence, either psa...
I am building EH from source following the steps listed on the [installation page](https://github.com/Illumina/ExpansionHunter/blob/master/docs/02_Installation.md). I get the following error when building EH. ```shell $ git clone https://github.com/Illumina/ExpansionHunter $ cd ExpansionHunter/...
When using a VCF generated by EH in tools such as `bcftools` they warn/error on contig information missing from the VCF header: ``` [W::vcf_parse] Contig 'chr1' is not defined in...
I would need to install bedtools version `2.27.0` on macOS Big Sur 11.5.2. I take the steps as described [in the documentation](https://bedtools.readthedocs.io/en/latest/content/installation.html#compiling-from-source-via-github) to build it from source, but the build...
Would it be possible to add a navigation panel to the left of each page? This can help navigation between related pages, and simplifies seeing the hierarchy of related pages....
Maybe it would be useful if we could expose means of assessing the integrity of a file. I can think of the following scenarios: 1. check if a file is...
First of all, I would like to thank you (again) for sharing such an excellent work with us. I usually use AddOrUpdate method to add a new item to the...
Hi, I should say: BPlusTree has lots of quite utile features specially for iterations. Features such as: tree.EnumerateFrom, tree.EnumerateRange, or tree.GetEnumerator(). Leveraging on these functions most of common operations are...