alphafold_pytorch
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Urinx
An implementation of the DeepMind's AlphaFold based on PyTorch for research
Can anyone help me with where the optimization is being done after predicting the torsion angles and distogram?
I guess this plmDCA.m can produce .mat file from .aln file. But, after I executed > octave plmDCA.m .aln I got only the following message and did not get any...
Thank you for putting this repo together, it is really helpful in understanding and preparing the features for AlphaFold. I was wondering if it is possible to include non-covalently-linked ligands...
from where install the utils module, the one from the: `python3 -m pip install utils` gives: `AttributeError: module 'utils' has no attribute 'generate_domains'`
Hi! I tried to feed a single sequence with the pipeline provided (feature.sh), but it is still running after 2 days straight. Also tried to feed into the pipeline an...
I loaded the checkpoints and they have shapes like [1, 1837, 64, 64] What kind of input does this represent? I thought the input was supposed to be a list...
In line 262 0f dataset.py, why not use the "exp_range_n_x" of line 261 for bin_x? if binary_code_bits: exp_range_n_y = np.expand_dims(range_n_y, 1) bin_y = np.concatenate([exp_range_n_y // (1
