rcps-buildscripts

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Install Request: GPU build of LAMMPS [IN05118528] [IN05126499]

87

EPSRC work. Current stable version is 29 Sep 2021 update 2. https://github.com/lammps/lammps/releases https://docs.lammps.org/stable/

heatherkellyucl

Install Request: CP2K v2023.1 (latest version) [IN05824831]

11

Download from: https://github.com/cp2k/cp2k/releases/ Request is initially for Young and for CPU and GPU versions. The latest CP2K needs a more recent version of OpenMPI than we currently have - 4.1.4....

balston

Package: CFDEM Detail: Couples liggghts with OpenFOAM. Link: https://www.cfdem.com/media/CFDEM/docu/CFDEMcoupling_Manual.html#installation https://github.com/CFDEMproject/CFDEMcoupling-PUBLIC License: GPL-3.0 Ticket/requester: [IN05879455](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05879455&recordId=a1N07000004WHWL&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=), IN:06010680 liggghts and various OpenFOAMs are in Spack, CFDEMcoupling is not. IN:06010680: LIGGGHTS 3.8.0 coupled with...

cjlegg

Install request: HISAT2 Version 2.2.1 [IN05990975]

9

HISAT2 (fast and sensitive alignment program for mapping next-generation sequencing reads) on Myriad http://daehwankimlab.github.io/hisat2/ Installation instructions here: http://daehwankimlab.github.io/hisat2/manual/

balston

User requesting installation of Next Gen sequencing app Subread: https://subread.sourceforge.net/

balston

Install request: RStudio package: RedditExtractoR, quanteda.textmodels, quanteda.textstats [IN05878210, IN05912689 ]

1

Package: RStudio package: RedditExtractoR, quanteda.textmodels Detail: Packages needed for students Ticket/requester: [IN05878210](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05878210&recordId=a1N07000004WG8k&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) Cluster: RStudio server Some install procedure info given on the Remedyforce ticket

cjlegg

Package: RStudio package: arrow Detail: Seems to require a newer R or an R built with a newer compiler - ongoing at 17 April 2023 Ticket/requester: [IN05914143](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05914143&recordId=a1N07000004WvZE&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) Cluster: RStudio server

cjlegg

Package: Stata - make same as on DSH Detail: Ticket/requester: [IN05641670](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05641670&recordId=a1N07000004JDrP&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) Cluster: presumable Myraid et al

cjlegg

Package: SciPy (Update) Detail: Ticket/requester: https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05290908&recordId=a1N0700000113XI&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId= Cluster: Young

cjlegg

Package: R package: tidyverse Detail: failing at subpackage withr ? Ticket/requester: [IN05767755](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05767755&recordId=a1N07000004U9Oh&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) and duplicate [IN05744484](https://ucl--bmcservicedesk.vf.force.com/apex/BMCServiceDesk__ConsoleRedirect?formulaFieldName=IncidentLaunchConsole&recordName=05744484&recordId=a1N07000004TgaP&incType=Incident&isdtp=vw&uiTheme=Theme3&formLayoutId=) Cluster: Unspecified

cjlegg