Install request: HISAT2 Version 2.2.1 [IN05990975]

[balston]

HISAT2 (fast and sensitive alignment program for mapping next-generation sequencing reads) on Myriad

http://daehwankimlab.github.io/hisat2/

Installation instructions here: http://daehwankimlab.github.io/hisat2/manual/

[balston]

I'm going to see if this is quick to do. If so, I'm going to build it on Myriad using the build scripts method.

[balston]

A test compile in my Scratch appears to have worked without errors.

[balston]

I'm going to produce a build script for HISAT2 this morning.

[balston]

Build script done and run on Myriad from ccspapp account:

module -f unload compilers mpi
./HISAT2-2.2.1_install

This seems to install correctly so now producing a module file.

[balston]

Slight problem I seem to have built it with the wrong version of GCC. Fixing build script.

[balston]

Had to edit the Mafile in the build script to stop it using /bin/g++ Now correctly using GCC 4.9.2.

[balston]

Now ready for user testing.

[balston]

Use the following module commands to access it:

module load python3/recommended
module load hisat2/2.2.1/gnu-4.9.2

[balston]

User informed.