Insane
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INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
Good Morrow. I have been able to build my simulation environment using Insane (BTW, love the software) including solvent and lipids, both custom and default. However, I have failed thus...
Hey i am working on a GoMartini structure of my protein and i recognized that if a use my coarse-grained protein structure, which i made with martinize2, insane.py counts the...
Hi Developers, Is there a way to include additional .itp files in insane in order to re-create a complex realistic plasma membrane with insane? For instance, is there a method...
it is shown in our group website: http://md.chem.rug.nl/index.php/force-field-parameters/lipids2/351-lipid.html?dir=Glycosphingolipids&lipid=DBG1 thank you
Seems like the insane installation is dependent on Python version. As `NameError: name 'xrange' is not defined` is a Python 2 vs Python3 problem. Does insane require Python 2.7?
Hi, i have been trying to use the script on both a WSL2 (Linux subsystem) and installed through anaconda (both via pip). I get the following error in both cases....
Dear developers, There is a difference in the POP2 naming (or maybe mapping too) scheme between the INSANE and the Martini database: Whereas it is `C2A D3A` in the INSANE....
Hi , how can build micelle and double bilayer? how can insert solute (1000) before parametrized, get system with solute, bilayer, water and ions?
When dealing with the `insane.py` script I noticed that when solvating a CG protein with ```bash insane -o system_solvated.gro -p system.top -f system.gro -sol W -salt 0.15 -center ``` The...
Are you guys looking for any help with the project? If there is anything to be done, I'd be happy to help!
