Running Simulations with Generated .gro/.top Files

[zamydm]

Good Morrow.

I have been able to build my simulation environment using Insane (BTW, love the software) including solvent and lipids, both custom and default. However, I have failed thus far in every attempt to run simulations as I continuously run into issues both in OpenMM and GROMACS with recognizing the particles.

Is there anyone who has managed to run successful simulations using custom lipid+coarse grained-proteins? If so, would you be willing to share what you did to get your simultions running effectively? Thanks!

I can provide my .top/.gro files if needed.