Toni Westbrook

icon indicating a website link http://www.toniwestbrook.com icon indicating an email [email protected]

icon company University of New Hampshire icon location Portsmouth, NH icon location Deputy Directory of Research Computing at the University of New Hampshire. Providing bioinformatics, HPC, and general computing solutions.

Results 3 comments of Toni Westbrook

command "paladin prepare -r2" throwing error related to memory ?

Hi @davidfbibby - to double check, I just clustered the latest revision of the clustered RVDB (around 3.1 GB of amino acids uncompressed) while profiling the memory usage. The maximum...

command "paladin prepare -r2" throwing error related to memory ?

~~Here's the link to the group that maintains the clustered RVDB: https://rvdb.dbi.udel.edu/ (that has both the clustered and unclustered references available).~~ Indexing the unclustered DB would need significantly more memory,...

command "paladin prepare -r2" throwing error related to memory ?

Apologies, that's a nucleotide version of the reference at that link! I totally missed that when I downloaded it yesterday. I'll take a look around for a clustered version of...