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TomographicImaging
A versatile python framework for tomographic imaging
It may be simpler for the user to set `CONDA_BUILD=ON` and then expect that `CMAKE_INSTALL_PREFIX` points to the environment variable `CONDA_PREFIX` if `CMAKE_INSTALL_PREFIX` is not passed. This is what I...
As required for the stochastic paper and discussed with @paskino, @epapoutsellis, @casperdcl and @KrisThielemans. Linked to https://github.com/TomographicImaging/CIL/issues/1588 and https://github.com/TomographicImaging/CIL/issues/1586
## Describe your changes - Allow SPDHG to take a sampler either from our sampler class or any class with a next(self) function - Deprecated prob from SPDHG, taking the...
Tests fail on windows. ``` ====================================================================== ERROR: test_download_data_input_n (test_dataexample.TestRemoteData) Test the download_data function, when the user input is 'n' to 'are you sure you want to download data' ---------------------------------------------------------------------- Traceback...
- [ ] GPU linux runners with caching - [ ] windows GHA #1918 - [ ] windows GPU PRs #1560 - [ ] windows GPU anvil reporting in GHA...
The clunky solution from #1729 (542294fa22204b0dbfb571f603049fc3706ec44e & 33ef42c5aa9e877c50e602125575c900d410434d) could be improved ```sh TESTS_FORCE_GPU=1 python -m unittest discover -v \ -k tigre -k TIGRE -k astra -k ASTRA -k gpu -k...
We want to avoid untested and unmaintained code examples in the documentation. These should be moved to separate files, run automatically (and tested) and inserted in the documentation correctly. For...
## Description E.g. we had set origin='bottom-left' and expected the origin to change. We should've instead been setting it to 'lower-left'. We should raise an error if the origin is...
In the [FGP_TV](https://github.com/vais-ral/CCPi-Regularisation-Toolkit/blob/master/src/Core/regularisers_CPU/FGP_TV_core.c#L241) class for the CCPi-Regularisation Toolkit the step-size (Lipschitz constant) is wrong. At the moment is `1/26` but the correct value for 3D arrays with unitary grid (`voxel-size=1.0`)...
Determine flat field and dark field data structures for normalisation. This is needed for Zeiss data, Diamond data. What to do when no flat and/or darks such as for Nikon...
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A versatile python framework for tomographic imaging