Thomas N Lawson

Handling multiple classes (and FDR)

1

I was wondering if there was a recommended way of using GSEApy when the analysis involves comparing more than 2 sample classes. e.g. control Vs class1, control Vs class2 ........

Optional files causing problems invoking workflows (galaxy v20.01)

3

I am getting problems when invoking workflows where optional input file parameters (i.e. the XML tool includes `optional="true"`) are left blank in the workflow. The workflows will either not run...

Rotate text for table header

11

**Please explain your intent** I would like to rotate text for a table header. In particular, have the heading text rotated so that it vertical in the table. As far...

Update the backend to be compatible with MSnBase

It would be useful to have a low memory option for the createDatabase function

The msPurity precursor ion purity calculation currently parse mzML files to automatically extract the isolation windows. This is an issue if a user is using either an mzXML file or...