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                                            Tommeri

leafcutter_cluster_regtools.py reports "IndexError: list index out of range"

I also have this problem. I made sure to use the option -s 1 when I used regtools for my bam files, but the issue persists. Is there any fix?...

error while running leafcutter_cluster_regtools.py - "IndexError: list index out of range"

> it looks like your chromosomes aren't being recognised. What genome build are you using? > > What happens when you include the --checkchrom flag? Yes, that was the problem....