TomBugnon

Allow user-defined specification of vigilance states

9

Hi all (@EtienneCmb, @raphaelvallat, and people following https://github.com/EtienneCmb/visbrain/issues/35 : @paulbrodersen, @grahamfindlay , @dougollerenshaw ) I finally implemented the long-awaited specification of arbitrary vigilance states from a (yaml) config file, which...

Fix min/max chan amps for all-positive(/neg) data

2

Hi Etienne and Raphael, Currently, Sleep doesn't handle well channels with all-positive or all-negative values, due to the way the maximum and minimum values for display are derived from the...

Fix: Fixate widget location in UiSettings frame

1

# Issue When scrolling through data with the slider or using the `Go To` widget, the Settings frame size changes due to the varying length of the first row's text...

Set new hypnogram format as default

1

There is currently an inconsistency when saving hypnogram data: the default button of the question box asking whether or not to use the new format is "No [use old format]",...

[Sleep] Facilitate scoring of long recordings

12

Hi @raphaelvallat @EtienneCmb , When scoring long recordings (24h in this example), the "current time" indicator is extremely thin and sometimes even disappears  It is now very impractical and...

Many clusters contaminated by noise

2

Hi all, @marius10p , you mention [here](https://github.com/cortex-lab/KiloSort/issues/141#issuecomment-399469121) that contamination by noise is often not an issue. However a lot of my clusters seem poorly isolated from noise in my data,...

SpikeGLXRecordingExtractor fails when gate > 0

31

Hi @samuelgarcia and all, Initializing a `spikeinterface.extractors.SpikeGLXRecordingExtractor` object from a probe directory with gate index 0 works properly: ``` $ ls subject_dir/run_name_g0/run_name_g0_imec0 1-6-2022_g0_t0.imec0.lf.bin 1-6-2022_g0_t1.imec0.lf.bin 1-6-2022_g0_t2.imec0.lf.bin 1-6-2022_g0_t0.imec0.lf.meta 1-6-2022_g0_t1.imec0.lf.meta 1-6-2022_g0_t2.imec0.lf.meta ``` ```python...

Split cluster based on raw amplitude view

2

Hi all, Does anyone know of a way to split clusters based on raw amplitude? - the amplitude view doesn't show the 'raw' amplitude type which was implemented https://github.com/cortex-lab/phy/issues/842 and...

Hi all, I would like to filter out once and for all some clusters from the similarity view, to go faster when examining possible merges.I can properly filter clusters in...

Fast update of only small part of a visual

6

Hi all, I'm really a beginner here and don't really understand how vispy works so forgive me for the possibly silly question (I'm struggling with vispy doc). I'm modifying an...