Tobias Polley

I had the same error before. It occurs if you take `./data_prepare_one.sh` with only one chain as input. You need to comment out this line: `python -W ignore $masif_source/data_preparation/01-pdb_extract_and_triangulate.py $PDB_ID\_$CHAIN2`.

Hey @celalp, not yet unfortunately. Do you have any idea for the solution or do you know if it is even possible?

Thank you for your detailed answer! That helps me a lot. I would prefer to have an output containing the two comparative patches with the coordinates and the respective residue...

@celalp and @biochunan thanks for your replies! I will take a look at it and verify the results.

Quick Update: There is a problem with the Python version. I see that Pymesh comes with Python 3.6.11, but I need at least 3.7. Does anyone happen to have a...

@biochunan It doesn't work with the Docker container either. I still get this error: `Traceback (most recent call last): File "/home/ec2-user/masif_seed/masif/source//masif_site/map_highprob_vertices_to_residues.py", line 19, in from biopandas.pdb import PandasPdb File "/usr/local/lib/python3.6/site-packages/biopandas/pdb/__init__.py",...

You can get it on Anaconda.

Looks like it no longer exists on Conda. But you can install it with the instructions from the repo. [Link to Reduce repo](https://github.com/rlabduke/reduce)