LiTing

hi,I'm using varsim_somatic(docker:rssbred/varsim),I got cosmic_somatic.vcf has no variant. My command is : /opt/varsim/varsim_somatic.py --reference ref_out/my_ref.fasta --id cosmic --som_num_snp 20 --som_num_ins 20 --som_num_del 20 --som_num_mnp 20 --som_num_complex 20 --cosmic_vcf CosmicCodingMuts_COSMICv96.vcf.gz --normal_vcf...

Thank you for sharing the varsim. I was testing it, I found in line 134 of varsim_somatic.py,the run_randvcf function should have 9 arguments, you only wrote 8,you missing the sample...

Hi,I cut off my raw data fastq to 300M(1000X),and use gene fuse to detect. The result was negative, no fusion detected. Using genefuse to detect 2G of my raw data...