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Teichlab
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
I'm developing a flask application that uses igblast 1.14.0 on a Windows Server 2016. After a couple of runs, I get the following types of errors that results in igblast...
Bumps [cryptography](https://github.com/pyca/cryptography) from 38.0.3 to 41.0.6. Changelog Sourced from cryptography's changelog. 41.0.6 - 2023-11-27 * Fixed a null-pointer-dereference and segfault that could occur when loading certificates from a PKCS#7 bundle....
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Hi, When running the `tracer summarise` function, I get the following error: ``` Traceback (most recent call last): File "/home/sebastiaan/miniconda3/envs/tcr_epi_benchmark/bin/tracer", line 33, in sys.exit(load_entry_point('tracer==0.5', 'console_scripts', 'tracer')()) File "/home/sebastiaan/miniconda3/envs/tcr_epi_benchmark/lib/python3.8/site-packages/tracer-0.5-py3.8.egg/tracerlib/launcher.py", line 43,...
Bumps [future](https://github.com/PythonCharmers/python-future) from 0.18.2 to 0.18.3. Release notes Sourced from future's releases. v0.18.3 This is a minor bug-fix release containing a number of fixes: Backport fix for bpo-38804 (c91d70b) Fix...
Bumps [scipy](https://github.com/scipy/scipy) from 1.9.3 to 1.10.0. Release notes Sourced from scipy's releases. SciPy 1.10.0 Release Notes SciPy 1.10.0 is the culmination of 6 months of hard work. It contains many...
Hi, im currently running tracer test but something went wrong at the trinity steps and seems like the result went wrong.  Is it something wrong with my conf file...
Why my output CDR3 all is NA, but other information J gene and V gene is correct. This is just an example
Hi, Thanks for your effort for developing TraCer! It's very convenient for us to get the clonotypes. Now I want to project my single cell full-length TCR to my 10X...
Hi! Thanks for developing Tracer! I am using it with a dataset of ~4k cells and there is something strange with the output of *assemble* with one specific cell. The...
Hi, I am trying use tracer to identify TCR sequence in full-length transcript. Can I skip assemble step like bracer. Thanks Best wishes.
