celloline

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I have tried to locate the id for the instance all over AWS and haven't found it, and I am in us-west-2 region. Is there a different ami id than...

bloughstephen

Hi, i would use "extract_features" to get RNA stat. after getting count.matrix using StringTie, and use this count matrix. but it returns error > [1] "[INFO]:Features extracted." Error in `[.data.frame`(features_all,...

jeongmeani

I tried to run the example on the AWS instance. The genome indexing worked, but the second command failed. I ran the command provided, though I reduced the ram usage...

Lila14

Demultiplex Fastqs at level of single cell

1

I was wondering if there was a tool for demultiplexing scRNAseq fastqs at the level of single cell, so that I have one fastq files for each cell in my...

sevans625

Use it on local server

1

Hi, I'm wondering if it can be used on local server, instead of AWS or EBI? Thank you! Kevin

kevin199011

Hi could you please explain better how to structure the directories for running the pipeline. I have tried several times but I keep getting error below: INFO:root:Paired:False INFO:root:Read-length:75 INFO:root:Mapping started...

yasinkaymaz