J_N_M

...I'll join this thread, since I came across exactly this problem today :). I fear it might be about the db size. A smaler db worked without problems for me....

I used EggNOG for the run that failed, and the EggNOG db was created using mmseq with `mmseqs databases eggNOG /my/db/path/EggNOG tmp` and `mmseqs createdb /my/db/path/EggNOG targetDB`. For the test...

Thanks! I will give it a try. MetaEuk outputs fasta and gff files for the predicted genes, so there is no need to run prodigal - however, I know that...