SIRF-Exercises
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SyneRBI
SIRF Training and demonstration material
01* currently says ``` if not ( Path("..") / ".." / "data" / "PET" / "mMR" / "NEMA_IQ" / "20170809_NEMA_60min_UCL.l.hdr" ).exists(): retval = subprocess.call("../../scripts/download_PET_data.sh", shell=True) ``` Best to use `download_data.sh...
I ran into some issues installing torch within the `synerbi/sirf:service-gpu` container. I cloned the SIRF-Exercises locally, then opened the folder within VSCode changing the .devcontainer base image from devel-sevice to...
@gschramm has the following tip: > We discussed having code block `hints` that users could unhide if they are stuck, an easy way to do this would be to have...
After installing latest nbstripout (0.7.1): ``` sirfuser@vagrant:~/devel/SIRF-Exercises$ git checkout master sirfuser@vagrant:~/devel/SIRF-Exercises$ git fetch origin sirfuser@vagrant:~/devel/SIRF-Exercises$ git reset --hard origin/master HEAD is now at 33fae8f replace MR data used for intro/synergistic...
the PET recon has a funny line  Also, it is called gradient descent, but it is actually ascending due to some minus signs. Better to switch the sign in...
Mcir cil
I made sure the scripts run again. PDHG in g_non_cartesian_reconstruction is not yet working. @KrisThielemans I uploaded the required test data to zenodo and adapted the download script such that...
I don't think `download_data.sh` can currently pick up data from the `/mnt` folder. ``` ~/SIRF-Exercises/scripts/download_data.sh -w ~/SIRF-Exercises/working_dir -D /mnt/materials/SIRF/Fully3D/SIRF/ -p Destination is "/home/jovyan/SIRF-Exercises/data" Download location is "/mnt/materials/SIRF/Fully3D/SIRF/" Downloading PET data...
Displayed images look the same after cropping - in fact the images before cropping are cropped for presentation! - bit confusing.
To be honest, I do not see the added value of the function `cd_to_working_dir` as it's use is just to change directory to a directory where the user will store...
