scMulan

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Hey Thanks a lot for your work and make the package available. I am trying to use scMulan for both integration and celltype annotation 1. The data is from a...

shobhitagrawal1

'scMulanTokenizer' object has no attribute 'stoi'

2

Thanks for providing the tutorials and they are super helpful. But I keep having this error when running scMulan.model_inference: Could you please help me to have a look? Cheers, Chloe

ChloeYou8

Hello, may I ask if it is possible to publicly create finetune scripts for cell type annotations

SELECT-FROM

Batch processing

2

Hello, Thanks for your great work. I have noticed that you don't use batch processing in your "get_cell_types_for_adata" function, which makes the feature extraction process very slow. Compared to the...

agemagician

Hello, Thanks for your great work! Does the current package support pre-training on user-generated datasets besides using the pretrained model provided?

AkshayaThoutam

This repo currently has no license which will unfortunately prevent the community from exploring and adopting any of it. Given its potential importance to advancing the field, it seems this...

nbdyrly

CUDA/GPU architecture requirements

1

hi, can you provide minimum system/GPU/CUDA requirements for installation? My understanding is the model is pre-trained so if no finetuning is required, can the tutorials be run without the GPU...

mjstrumillo

Hi, thanks for the great job. I am wondering can scMulan be applied to single cell perturbation prediction? More specifically, fine-tune it on the perturb-seq data, and prediction the gene...

weizhiting

Is there a way to extract output_attention for each cell?

GordianArnav

Thank you for open sourcing your models and sharing tutorials! Will the team provide scripts for model fine-tuning as well? I'm interested in using the model for metadata prediction.

KristinTsui