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Batch processing

Open agemagician opened this issue 1 year ago • 2 comments

Hello,

Thanks for your great work.

I have noticed that you don't use batch processing in your "get_cell_types_for_adata" function, which makes the feature extraction process very slow.

Compared to the scGPT, which processes inputs in batches, it is 24 times faster.

Do you have any plans to support batch processing ?

agemagician avatar Feb 15 '24 11:02 agemagician