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:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Docker image does not build yet, need to wait for pangolin-assignment to be an official release instead of pre-release. Setting as a draft PR for now Just prepping for when...
Hello; I need an updated augur tool for making a Nextflow workflow for Nextstrain. Augur needs a version of python that is 3.7 or greater; apt-get downloads python 3.6.something. I...
Pull Request (PR) checklist: - [x] Include a description of what is in this pull request in this message. - [x] The dockerfile successfully builds to a test target for...
I have an evil plan to create this dockerfile to make downloading files from NCBI for tests easier. This container includes NCBI's datasets and dataformat. Pull Request (PR) checklist: -...
Hello; This was a requested container, Issue #416. It was something I looked into a few months ago but never completed. It uses the pipelines conda package in the build....
### What container needs an update? https://github.com/ncbi/amr/releases small bugfix included in this release. Dockerfile will likely be nearly identical to the next most recent version already in this repo Happy...
I didn't change the dockerfile much. I updated to jammy and added some tests. Pull Request (PR) checklist: - [X] Include a description of what is in this pull request...
### What tool are you looking for and why? This would be useful to put in a container : https://github.com/jodyphelan/TBProfiler It doesn't look like the authors have created a container....
Pull Request (PR) checklist: - [X] Include a description of what is in this pull request in this message. - [X] The dockerfile successfully builds to a test target for...
A bunch of extra tools/dependencies for this standalone script, but would be useful to have handy https://github.com/rrwick/Unicycler/blob/main/docs/unicycler-polish.md Could start with the existing dockerfile for 0.4.8 and add other dependencies. DEFINITELY...