spikeinterface
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SpikeInterface
A Python-based module for creating flexible and robust spike sorting pipelines.
algorithm implementation in [hs-detection](https://github.com/lkct/hs-detection)
Hi, First, thank you so much for developing this amazing spike sorting package. I have been using it in our data pipeline. However, I notice that the API often undergo...
Hi Everyone Just a small typo I want to mention which may make some headaches later for people : https://github.com/SpikeInterface/spikeinterface/blob/678a31eca474027e7d8497e4f2bc7c8746bb2ee1/spikeinterface/sorters/sorterlist.py#L98 this warning should be : get_default_sorter_params() Hence the two words...
Hello! One of the researchers at Columbia ran into this issue with waveform extractors that I thought I would post here. If there are 0 length spike trains, the waveform...
Ideally, I would like to calculate WaveformExtractor "we" without setting a limit to "max_spikes_per_unit". But it requires the allocation of a large memory which exceeds my RAM. So I didn't...
I am trying to sort some multichannel data using spikeinterface and pykilosort, and am getting an error that may be a bug. The process that caused it is the following:...
When i try to run the code, exception occurred. I tried to resolve the issue by downgrading the numpy version to 1.21.5, but the problem persisted. Exception has occurred: ValueError...
Fixes https://github.com/SpikeInterface/spikeinterface/issues/814 This fixes a bug in `read_phy`: when excluding `noisy`, the spike clusters and times were not filtered accordingly, so the spike trains had many additional "0" spikes (because...
In #856 I forgot to scale the timestamps of the spikes correctly. This small PR fixes that by scaling the timestamps of neo (which are usually in seconds) to frames....
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A Python-based module for creating flexible and robust spike sorting pipelines.