spikeinterface

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Feature request: `gputouse` keyword argument in `run_<sorter that supports GPU>()` and `run_sorter()`

1

**Feature** ``` gputouse: Optional[int, Sequence[int]]. Integer or Sequence of integers indicating the index of the GPU(s) for spike sorting. For CPU, and not GPU, set to None. Index for each...

caniko

We load again a waveforms extension with differents params we should raise error.

samuelgarcia

error trying to load waveforms from existing folder

4

Hi, Running ``` we = si.extract_waveforms(recording, sorting, wf_dir, load_if_exists=True, overwrite=False, ms_before=0.25, ms_after=0.75, max_spikes_per_unit=1e5, n_jobs=1, chunk_size=30000) ``` raises `ValueError: spikeinterface.Base.load() file_path must be an existing folder or file`, though I just...

Yizhar-Lab

Trouble loading Intan Data

5

Hi, I've been using Intan system for my recordings and have trouble importing data to SpikeInterface. When I use the IntanExtractor, it expects a data format with .rhd extension. However,...

congcong96

Updated WaveformExtractor.load_from_folder

6

Added the option to give a recording and/or sorting object as to not reload them if they already exist (gaining quite a bit of time and memory).

DradeAW

Hybrid recordings

9

DradeAW

Correlogram gaussian

2

Implementing the code for gaussian-filtered correlograms computed in numba.

DradeAW

Gaussian filter implementation

2

This runs **very** slow (49min on a 64-channels 45min recording). Need to figure out why and fix it (for a 1s-chunk of 64 channels, it should take ~0.4s). There might...

DradeAW

Added remove_duplicated_spikes

1

Added remove_duplicated_spikes sorting class and wrapper function.

DradeAW

Avoid intermediate recording.dat file for SpikeGLXRecordingExtractor

1

Hi all, We are sorting enormous datasets for which the extra `recording.dat` binary copy becomes a serious issue, both in terms of speed and disk usage. I see [here](https://github.com/SpikeInterface/spikeinterface/blob/37d40336cce3185acda29d76e5c90a7a970226d9/spikeinterface/sorters/kilosortbase.py#L120) that...

TomBugnon