probeinterface

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Integration with NWB

7

@lfrank @bendichter You both mention NWB backend for handling probe geometry description. I have NOT studied then yet. I will. Are theses two codes linked somehow ? https://github.com/NovelaNeuro/ndx-franklab-novela this seams...

samuelgarcia

Automatic wiring pathway not found

1

Hi, I want to map Cambridge ASSY-77 M1 to the Cambridge adaptor ADPT A64-Om32x2 to the RHD 64 channel headstage. When I ask for available pathways, I don't see the...

depreterc

read_probeinterface() does not read in device_channel_indices

8

Hello, I got this problem when attempting to attach a probe read in using read_probeinterface(). Since I have only one probe, I first convert the read in probegroup to dataframe...

ThetaS

Make our internal functions to read imro tables consistent with Spikeglx C++ file

8

@cwindolf pointed to us the exact mapping from probe type to geometry: https://github.com/billkarsh/SpikeGLX/blob/master/Src-imro/IMROTbl.cpp#L142 Right now we are doing this with a local ad-hoc solution: https://github.com/SpikeInterface/probeinterface/blob/2dfc7378b991aa83d3b5bd1036666b2b9c9c2a69/src/probeinterface/io.py#L662-L894 We should follow the convention...

h-mayorquin

Utah Arrays (or other 3D contour shapes)?

1

@alejoe91 @samuelgarcia Discussion from earlier today: how best to add support for describing the contour geometry for non-silicon probes like a Utah array? Current support as I understand is only...

CodyCBakerPhD

plot_probe() requires xlims and ylims to be defined for either to work

1

https://github.com/SpikeInterface/probeinterface/blob/d1d594af3f97d94fbf04df2b208c3bd8e2ea148d/probeinterface/plotting.py#L168-L169 It's unclear that both xlims and ylims are both needed for plotting to be limited in either of these dimensions individually. Perhaps this is unintended consequence, and we should...

D1o0g9s

Check consistency with BEP032 version 0.2.0

1

[BEP032](https://bids.neuroimaging.io/bep032) had some updates recently. We should check for consistency between the current probeinterface version and BEP032 version 0.2.0.

JuliaSprenger

Possible mismatch on cambridge neurotech ASSY-37-Fb

3

Hello, I loaded the information of this probe and noticed that the channels ids do not match the ones found on cambridge neurotech's website (same map as the one provided...

mfvd

More desctiptions

1

@lfrank have propose this > probe material (silicon, polyimide, SU-8, etc.) > electrode material (platinum, iridium, gold, etc.) > electrode plating (PEDOT, etc.) > probe thickness (I didn’t see this...

samuelgarcia

Possible channel map discrepancy ASSY-77 H3 probe

14

Hi there! I was trying to use the Spike Interface pipeline and noticed that the AASY-77 H3 channel map I got from probeinterface did not quite resemble the channel maps...

ross-folkard