probeinterface

probeinterface copied to clipboard

From histology to probemap.

6

Hello, I'm relatively new to sorting data, and I'm currently working on creating probes for analyzing my data. The records consist of four groups of four single electrodes (not tetrodes)....

Gfernandezv

Unable to find an appropriate device to wire to

7

I posted this on the main spike interface issue page and was suggested the following: "Looks like we don't have wiring to RHD2216 yet. I would open this issue on...

ebach23

plane_axes ?

5

Hello, I'm new to the probeInterface project. I'm working on a sorting pipeline using SpikeInterface from an NWB file. I load the file using spikeInterface and get the positions of...

borrepp

plot_probe_group -> plot_probegroup

2

In regards to trying to get more api regularity the object is called a probegroup we don't ever write it as a probe_group. So I would say that to be...

zm711

Future plans for probes in probe library?

10

Hi, I'm the developer of [Pinpoint ](https://github.com/VirtualBrainLab/Pinpoint) and I think it would be really nice to use probeinterface to automatically generate 3D models of the many probes people are using...

dbirman

There are examples of json files with contact_id, e.g. https://github.com/SpikeInterface/probeinterface_library/blob/main/neuronexus/A4x8-5mm-100-400-703/A4x8-5mm-100-400-703.json however the ReadTheDocs does not mention this field: https://probeinterface.readthedocs.io/en/latest/format_spec.html

bendichter

Make sure we are aligned with @jenniferColonell probe description `SGLXMetaToCoords`: https://github.com/jenniferColonell/SGLXMetaToCoords/blob/main/SGLXMetaToCoords.py#L79-L147 `ProbeInterface`: https://github.com/SpikeInterface/probeinterface/blob/main/src/probeinterface/io.py#L716-L1038

alejoe91

4 shank probe issue - suggestion for new release.

1

Hi All, We recently ran into issue #200 for the 4-shank probe, that was fixed by either downgrading to `0.2.16` or using the dev version (i.e. this is broken in...

JoeZiminski

Clarification of Device Wiring

9

Hello I'm running into some issues with properly setting up the probe variable for a Cambridge probe recording in open ephys. I'm mainly confused by wiring_to_device and device_channel_indices. Does wiring_to_device...

nmtimme

[WIP] Update `read_nwb`

2

@alejoe91 @samuelgarcia Update `read_nwb` to enable loading of `ndx_probeinterface.Probe` objects as `probeinterface.Probe` objects

khl02007