Spartanzhao

Thank you so much, I think these are all the thing I need: I only need to run the hg19. I don't need viruses index. hs37d5.fa.gz, chromFa.tar.gz ,Homo_sapiens.GRCh37.dna.primary_assembly.fa.gz, gencode.v19.annotation.gtf.gz, refGene.txt.gz,...

Thanks, I'll take a try.

After I run:sh download_references.sh , It direct exit:I think it excute these code: if [ $# -ne 1 ] || [ -z "$1" ] || [ -z "${COMBINATIONS[$1]}" ]; then...

Thanks, I'll take a try.

I appreciate your help! Your ARRIBA works very well and successfully detected gene fusion we have known in one sample that others did not. But we want to further identify...

Yes, this is panel-seq data, which parameters I can use to improve my results?

Okay, Thank you so much!

No, Thank you so much ,and Thanks for your patients, You did a very good work and this software helped me a lot. It can detect fusion genes that others...

could you explain why I can't draw my H3K27ac data? why I have this bug? --------------------------------------------------------------------------- RuntimeError Traceback (most recent call last) in 7 vis.matrix_plot(vmin=0) 8 #vis.plot_chromosome_bounds(linewidth=2) ----> 9 vis.plot_signal('H3K27ac',...

Okay, I'll try another way to generate my bigwig file. 在 2022-01-19 08:36:17，"Xiaotao Wang" ***@***.***> 写道： @Spartanzhao I've never seen this error before ... can you first check whether your...