Bruno Batista
Bruno Batista
What I do is first build the reference with all samples I have and then use a simple `for` loop to perform analysis by sample against the reference created
I guess I wasn't so clear in my answer. I use the same samples as Normal and Tumor as well... My loop starts building the reference with all samples from...
Can you post your command?
Just re-opening the post, I'm having the same issue... I'm using cnvkit 0.9.7 on a CentOS 8 system. Installation was performed using pip! The error is shown when running `batch`....
> Also encountering the same issue ( cnvkit 0.9.7 installed with Conda on CentOS 7.8 ) : > > #--------------------------------- > RuntimeError: Subprocess command failed: > $ Rscript --vanilla /scratch/amelinba/slurm-job.15746118/tmp5t3mgy05...