Solyris83

Forcing chromap to output ALL result

2

Hi, is there any way to force chromap to output all the unmapped and multi-mapped reads? And how are they identified? It was mentioned in issue 20 that multi-mapped reads...

regenotyped samples produces all Genptype (GT) with ./.

8

Hi, I have regenotyped 9000+ samples and gotten a small set of 72 samples with all genotype (GT) results to unknown (./.) The other 9000 samples have around 2400 structural...