SolKatzman
SolKatzman
Perhaps I can clarify with a bit more detail regarding one (paired-end) read and 2 isoforms of one gene. Here are the gtf entries for the SNC1 (2 exons) and...
I have done various experiments to determine what is required in the gtf. Here is my best estimate of how kallisto processes the gtf in order to generate the genomebam....
I appreciate your frank comments about the support for the genomebam feature. I had not used kallisto for several years, so I was excited to see the release notes for...