Smilenone

I have met the same problem

It would be nice if you send me an example of the calculation. Thanks again :) Best, Qunlun ------------------ 原始邮件 ------------------ 发件人: "broadinstitute/Tangram" ***@***.***>; 发送时间: 2022年11月22日(星期二) 晚上11:04 ***@***.***>; 抄送: "Qunlun ***@***.******@***.***>; 主题: Re: [broadinstitute/Tangram] How...

Thanks for your detailed response! I have one more question, should I use the average.pval to evaluate whether there exists batch effect in my data? The average.pval