Silvia

Unique genes issue

3

Hi there, I'm running a pangenome analyisis on 20 bacterial strains using roary version 3.13, on a server running CentOS 7. I want to get the unique genes present in...

Issue with new anvi-setup-ncbi-cogs

20

## anvi-setup-ncbi-cogs gets stuck Hi guys, it's me again. I'm trying to use the new awesome COG20 but got problem with anvi-setup-ncbi-cogs. Since I had problems with the automathic download,...

Problem to load

1

Hi there, I installed microbiomeutilities on our Rocky Linux 9 system, with R version 4.3.2. I did not get any ERROR but only warinigs: > `> devtools::install_github("microsud/microbiomeutilities",force=T) > Downloading GitHub...

Pathovar level

5

Hi there, Thanks for this great container, very helpful. However, I have some troubles at species and pathovars level. 1) I need primers for a particular bacterial species. There are...