Simon Dedman

Low-N Sensitivity analysis, bootstrapping, optimising

1

Chuck stuff: It does seem that the Gaussian models stop working reliably (I got individual runs to work for bull and sandbar sharks, but could never get the same parameters...

Either in bfcheck or separate, possibly separate as a function call within gbm.auto. Test for ZI outliers (spatial) autocorrelation NAs columns in wrong format object is tibble not data.frame

Add Data checking function gbm.precheck

1

Takes samples and vector of expvar & resvar columns. Produces: Scatterplots of expvars LM plots Corr plots spatial autocorrelation? Do it as a markdown doc to produce a webpage, add...

Seen when Zeke ran basemap alone, after librarying gbm.auto. error for others?

also tcgaus = tcfam2, lrgaus = lrfam2, bfgaus = bffam2, Gaus_Bars = Fam2_Bars similarly bin to fam1

Currently: > Line, dot and bar plots, a report of all variables used, statistics for tests, variable interactions, predictors used and dropped, etc. If selected generates predicted abundance maps, and...

Loop: add prediction metrics summary

1

/home/simon/Documents/Si Work/PostDoc Work/Gbmauto help/Chuck Bangley/Mig/MLEvalMetricsBin.csv Scrape details from each MLEvalMetricsBin.csv, use same coding style as L267 (I think? Need to find a loop output, waiting for NAS to repopulate my...

gbm.auto.R L1389 & 1399. Do 'grids' objects satisfy the raster constraint of raster::predict's object param? RasterStack or RasterBrick? Or would have to convert? More trouble than it's worth for a...

Auto: Multicore processing

4

Only worthwhile for the BRT element, the rest is quick. Can only do for multiple BRTs i.e. Bin & Gaus at same time, then Bin simp & Gaus simp at...