Ziming_Chen

Segmentation Fault

2

Hi, I'm currently doing 6mA methylation detection with megalodon. But there is a issue that I cannot figure out. The error file for batch running always showed "Segmentation fault". I...

Dorado0.8.0 lost lots of reads after rebasecalling

2

# Issue Report ## Please describe the issue: The target base number of output fastq should be over 500M, which was true when using Dorado 0.6.0. However, when I used...

uncertain strand direction in the pileup bed file

4

Hi, I found a significant issue in the pileup file where some positions have both "+" and "-" directions. However, a specific position cannot have two A bases. it should...

modkit dmr pair of pileup bed file subset to 4mC

6

Hi, I ran the ```[email protected]_4mC_5mC@v2``` modified model from Dorado. And I use modkit to generate the bed file including 4mC and 5mC positions using this command: ``` modkit pileup $minimap2_primary/ecoli_a_${SLURM_ARRAY_TASK_ID}_primary.sorted.bam...