Silas Sun

icon location Focusing on the use of bioinformatics tools to solve the problem of the diagnosis and treatment of diseases

Results 4 comments of Silas Sun

ValueError: After removing rows with only NaN interactions, none remain.

+1 yes the same error :(

ValueError: After removing rows with only NaN interactions, none remain.

> hi, which version of squidpy are you using? 1.4.1

ValueError: After removing rows with only NaN interactions, none remain.

> @Silaschuwen have you used normalized data? i tried normalized data but it doesn't look like it's working out very well. here is my code (the same as the notebooks/examples)...

ValueError: After removing rows with only NaN interactions, none remain.

> @Silaschuwen You have "use_raw" set to true which may be using un-normalized counts. I would try setting it to False. Maybe the default threshold is too high, you can...