Siddharth Uppal

ploidy set to 2? And failing at bcftools consensus

4

Hey, I have 2 inquiries. I am running snippy to detect variance between multiple copies of the same part of a bacterial genome. 1. I saw the log (attached) of...

PhyloFlash aborting while running Emirge

3

Hey, thanks a lot for building such an amazing tool with great documentation. I was using the tool using the following command and it seems to fail while running Emirge....

Hey, I'm using `phyloFlash_compare.pl` to visualize the data generated using PhyloFlash. The script is able to generate barplot,matrix, and ntu_table but errors out when creating the heatmap. Do you think...

I'm getting the following error when clustering DNA sequences of genes predicted using [prodigal](https://github.com/hyattpd/Prodigal). ``` there must be an error: 4555074 deleted from 8264926 that now is empty, but not...

Optimal clustering parameters

1

Hey, I'm trying protein clustering for the first time and need some advice. I would like to cluster bacterial proteins from 20 different metagenomes to obtain representative clusters across all...

Fix Issue#349

2

`median_completeness` is being set to NA when `filtered_df` is empty. Which is causing the `TypeError: boolean value of NA is ambiguous` error reported in [issue#349](https://github.com/KwanLab/Autometa/issues/349). Setting median completeness to 0...

Fixes [issue#347](https://github.com/KwanLab/Autometa/issues/347)